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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:89.4TPM
GTEx:39.2RPKM
FANTOM5:171.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA019053

  

Antibody HPA019061

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   Medium  

Peripheral nerve/ganglion

 Medium   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

89.4
overview Male, age 54 Sample 1
TPM: 73.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 95.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 87.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 93.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 76.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 96.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 98.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 84.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 100.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 86.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 99.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 98.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 71.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

39.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 41.3
Samples: 149

Max RPKM: 85.7
Min RPKM: 26.5
Std RPKM: 9.8
Median RPKM: 38.1
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 85.7
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 80.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 78.4
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 77.1
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 69.5
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 62.5
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 61.8
GTEX-145LS-2926-SM-5O99G 60-69 years, female 58.0
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 56.3
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 55.6
Show all
Colon - Transverse
RPKM: 37.7
Samples: 196

Max RPKM: 81.8
Min RPKM: 21.6
Std RPKM: 9.0
Median RPKM: 35.8
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 81.8
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 76.2
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 69.6
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 65.1
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 61.5
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 61.5
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 57.2
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 56.4
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 56.3
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 56.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

171.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 171.3
FF:10014-101C5 62,83,84 years, mixed 171.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.