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TPD52

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:119.1TPM
GTEx:10.5RPKM
FANTOM5:88.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA028427

  

Antibody HPA062167

  

Endothelial cells

 Medium   Not detected  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 Medium   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

119.1
overview Male, age 54 Sample 1
TPM: 173.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 107.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 111.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 99.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 51
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 94.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 131.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 117.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 112.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 178.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 169.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 112.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 89.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.4
Samples: 149

Max RPKM: 12.5
Min RPKM: 1.0
Std RPKM: 1.8
Median RPKM: 4.1
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 12.5
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 9.8
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 9.7
GTEX-XBED-1726-SM-47JYO 60-69 years, male 9.6
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 8.3
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 8.3
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 8.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 8.2
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 7.6
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 7.4
Show all
Colon - Transverse
RPKM: 15.2
Samples: 196

Max RPKM: 41.8
Min RPKM: 0.8
Std RPKM: 9.8
Median RPKM: 17.1
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 41.8
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 41.7
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 34.7
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 33.1
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 32.3
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 31.7
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 30.8
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 30.3
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 29.9
GTEX-139YR-2126-SM-5KM11 50-59 years, male 29.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

88.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 88.3
FF:10014-101C5 62,83,84 years, mixed 88.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.