Fields »
ABOUT
HELP
BLOG
RAP1GAP

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:19.8TPM
GTEx:5.1RPKM
FANTOM5:18.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA001922

  

Endothelial cells

 Not detected  

Glandular cells

 High  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

19.8
overview Male, age 54 Sample 1
TPM: 52.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 33.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 10.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 9.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 13.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 21.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 22.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 26.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 16.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.7
Samples: 149

Max RPKM: 6.5
Min RPKM: 0.0
Std RPKM: 0.7
Median RPKM: 0.5
GTEX-V955-1726-SM-4JBHF 60-69 years, male 6.5
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 5.1
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 3.6
GTEX-XBED-1726-SM-47JYO 60-69 years, male 2.9
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 2.5
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 2.2
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 2.0
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 2.0
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 1.8
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 1.6
Show all
Colon - Transverse
RPKM: 8.5
Samples: 196

Max RPKM: 36.6
Min RPKM: 0.0
Std RPKM: 7.1
Median RPKM: 8.1
GTEX-YB5E-1626-SM-5IFIQ 40-49 years, male 36.6
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 35.8
GTEX-11LCK-2026-SM-5A5MA 30-39 years, male 32.3
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 26.7
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 26.1
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 23.5
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 21.8
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 20.6
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 20.1
GTEX-QCQG-1626-SM-48U26 50-59 years, female 20.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

18.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 18.2
FF:10014-101C5 62,83,84 years, mixed 18.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.