We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
MAP2
  • premium

    TISSUE

  • premium

    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:43.1RPKM
FANTOM5:1112.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:High
 

Antibody staining

Antibody HPA008273

 

Antibody HPA012828

 

Antibody CAB001984

 

Glial cells

Not detected   Not detected   Not detected  

Neuronal cells

High   Medium   High  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

43.1

GTEx sample id

Sample description

RPKM

Brain - Caudate (basal ganglia)
RPKM: 43.1
Samples: 117

Max RPKM: 137.5
Min RPKM: 6.0
Std RPKM: 25.6
Median RPKM: 40.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 137.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 113.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 110.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 98.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 92.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 91.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 89.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 86.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 85.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 84.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 80.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 78.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 77.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 76.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 76.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 76.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 72.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 72.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 69.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 65.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 64.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 64.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 63.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 62.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 62.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 62.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 61.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 60.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 60.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 56.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 54.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 53.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 52.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 52.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 51.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 51.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 49.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 49.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 48.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 48.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 48.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 48.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 47.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 47.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 47.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 46.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 46.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 44.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 44.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 43.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 43.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 43.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 43.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 43.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 42.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 42.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 42.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 41.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 40.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 39.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 39.6
GTEX-RVPU-0011-R5A-SM-2XCAD 50-59 years, male 39.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 37.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 36.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 35.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 33.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 33.6
GTEX-12WSB-0011-R5b-SM-5GU67 60-69 years, female 33.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 32.6
GTEX-OHPN-0011-R5A-SM-2I5FF 60-69 years, female 32.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 31.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 31.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 30.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 29.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 29.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 28.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 28.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 28.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 27.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 27.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 27.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 26.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 26.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 25.7
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 25.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 25.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 25.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 24.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 24.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 24.1
GTEX-XOTO-0011-R5A-SM-4B657 50-59 years, male 22.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 22.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 22.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 21.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 20.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 20.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 19.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 17.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 17.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 16.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 15.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 14.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 14.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 14.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 13.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 12.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 11.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 10.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 10.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 10.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 10.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 10.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 8.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 7.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 7.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 6.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 6.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

1112.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 1268.3
FF:10164-103B2 76 years, female 1268.3

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.