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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA000440

 

Antibody CAB000052

 

Antibody CAB002800

 

Antibody CAB056154

 

Antibody CAB068221

 

Provider

Atlas Antibodies
Sigma-Aldrich
  DakoCytomation
  DakoCytomation
  Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
 

Product name

HPA000440   M0701   M0742   AMAb90519   AMAb90518  

Host species

Rabbit   Mouse   Mouse   Mouse   Mouse  

Clonality

pAb   mAb   mAb   mAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Supernatant   Supernatant   Protein A/G   Protein A/G  

Other gene match

         

Released in version

1   1   1   10   13  

References

2          

Proper citation

Atlas Antibodies Cat#HPA000440, RRID:AB_611377   Dako Cat#M0701, RRID:AB_2314143   Dako Cat#M0742, RRID:AB_2237910   Atlas Antibodies Cat#AMAb90519, RRID:AB_2665572   Atlas Antibodies Cat#AMAb90518, RRID:AB_2665571  

VALIDATION SUMMARY

 
 

Antibody HPA000440

 

Antibody CAB000052

 

Antibody CAB002800

 

Antibody CAB056154

 

Antibody CAB068221

 
Immunohistochemistry

Supported  

Validated
  Supported   Supported  

Validated
 
Western blot

Supported   Supported   Supported   Uncertain   Uncertain  
Protein array

Supported          

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA000440

 

Antibody CAB000052

 

Antibody CAB002800

 

Antibody CAB056154

 

Antibody CAB068221

 

Formal validation: Orthogonal

 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
     
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 

 
     
 

Figure description

  Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.       Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.  
 

Formal validation: Orthogonal

 
Validated

Spearman correlation >0.6 for protein and RNA expression in tissues.
       

 
       

Figure description

  Distribution of protein expression (antibody staining) and RNA expression (TPM) across 37 tissues.        
 

Standard validation

Supported   Supported   Supported   Supported   Supported  

         

Figure description

Immunohistochemical staining of human tonsil shows strong cytoplasmic positivity in germinal center and non-germinal center cells.   Immunohistochemical staining of human lymph node shows strong cytoplasmic positivity in lymphoid cells outside reaction centra and reaction center cells.   Immunohistochemical staining of human spleen shows strong cytoplasmic positivity in cells in red pulp.   Immunohistochemical staining of human tonsil shows strong cytoplasmic positivity in germinal center cells.   Immunohistochemical staining of human tonsil shows strong cytoplasmic positivity in germinal center cells and non-germinal center cells.  

Expression

RNA: detected in 37 tissues
Protein: detected in 10 cell types
  RNA: detected in 37 tissues
Protein: detected in 9 cell types
  RNA: detected in 37 tissues
Protein: detected in 9 cell types
  RNA: detected in 37 tissues
Protein: detected in 7 cell types
  RNA: detected in 37 tissues
Protein: detected in 10 cell types
 

Retrieval

HIER pH6   HIER pH9   None   HIER pH6   HIER pH6  

Antibody dilution

1:200   1:500   1:1   1:1000   1:4000  

Literature conformity

Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Consistent with RNA expression data.   Consistent with RNA expression data.   Consistent with RNA expression data.   Consistent with RNA expression data.   Consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA000440

 

Antibody CAB000052

 

Antibody CAB002800

 

Antibody CAB056154

 

Antibody CAB068221

 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Supported

Analysis performed using a standard panel of samples.
Single band corresponding to the predicted size in kDa (+/-20%).
  Supported

Analysis performed using a standard panel of samples.
Single band corresponding to the predicted size in kDa (+/-20%).
  Uncertain

Analysis performed using a standard panel of samples.
Single band larger than predicted size in kDa (+20%) but partly supported by experimental and/or bioinformatic data.
  Uncertain

Analysis performed using a standard panel of samples.
Only bands not corresponding to the predicted size.
 

         

Figure description

Lane 1: Marker [kDa] 219, 112, 85, 49, 32, 25, 17.5
Lane 2: RT4
Lane 3: EFO-21
Lane 4: A-431
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 230, 110, 82, 49.3, 32.2, 25.5, 17.6
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: A-431
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 206, 113, 82, 49, 32, 26, 17.8
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: A-431
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 100, 70, 55, 35, 25, 15, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
   

Target mass (kDa)

147.5, 131.1, 83, 67.9   147.5, 131.1, 83, 67.9, 16.1, 12.6, 9.7, 4   147.5, 131.1, 83, 67.9, 16.1, 12.6, 9.7, 4   147.5, 131.1, 83, 67.9, 16.1, 12.6, 9.7, 4   147.5, 131.1, 83, 67.9, 16.1, 12.6, 9.7, 4  

Antibody dilution

1:500   1:600   1:2   1:1000   1:1000  

PROTEIN ARRAY

 
 

Antibody HPA000440

 

Antibody CAB000052

 

Antibody CAB002800

 

Antibody CAB056154

 

Antibody CAB068221

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
         

         

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.          

Antibody dilution

1:1000          

ANTIGEN INFORMATION

 
 

Antibody HPA000440

 

Antibody CAB000052

 

Antibody CAB002800

 

Antibody CAB056154

 

Antibody CAB068221

 

Antigen

Recombinant protein fragment   Native protein   Native protein   Recombinant protein   Recombinant protein  

Length (aa)

138          

Antigen sequence

KLENLEPEHEYKCDSEILYNNHKFTNASKIIKTDFGSPGEPQIIFCRSEA
AHQGVITWNPPQRSFHNFTLCYIKETEKDCLNLDKNLIKYDLQNLKPYTK
YVLSLHAYIIAKVQRNGSAAMCHFTTKSAPPSQVWNMT
         

Matching transcripts

PTPRC-001 - ENSP00000411355 [100%]
PTPRC-002 - ENSP00000306782 [100%]
PTPRC-005 - ENSP00000356337 [100%]
PTPRC-006 - ENSP00000433536 [100%]
         

Other gene match

         
ANTIGEN VIEW
PTPRC-001
PTPRC-002
PTPRC-005
PTPRC-006

RELEVANT PUBLICATIONS

 
 

Antibody HPA000440

 

Antibody CAB000052

 

Antibody CAB002800

 

Antibody CAB056154

 

Antibody CAB068221

 

1.

Variance decomposition of protein profiles from antibody arrays using a longitudinal twin model
Kato BS et al
Proteome Sci 2011;9:73
         

2.

CD99 is a novel prognostic stromal marker in non-small cell lung cancer
Edlund K et al
Int J Cancer 2012;131(10):2264-73
         
 

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