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JMJD4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:4.2TPM
GTEx:8.5RPKM
FANTOM5:14.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA027260

  

Antibody HPA052861

  

Endothelial cells

 High   Medium  

Glandular cells

 Not detected   Medium  

Peripheral nerve/ganglion

 Medium   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

4.2
overview Male, age 54 Sample 1
TPM: 5.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 3.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 3.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 4.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 4.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.3
Samples: 149

Max RPKM: 18.1
Min RPKM: 2.3
Std RPKM: 3.0
Median RPKM: 7.7
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 18.1
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 17.2
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 15.8
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 14.6
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 14.2
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 13.8
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 13.8
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 13.6
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 13.6
GTEX-XBED-1726-SM-47JYO 60-69 years, male 13.1
Show all
Colon - Transverse
RPKM: 8.7
Samples: 196

Max RPKM: 18.2
Min RPKM: 3.9
Std RPKM: 2.5
Median RPKM: 8.3
GTEX-Y114-1526-SM-4TT79 50-59 years, female 18.2
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 16.3
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 16.3
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 15.3
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 14.7
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 13.8
GTEX-X15G-1326-SM-4PQZJ 50-59 years, female 13.3
GTEX-QDVJ-1326-SM-48U1X 50-59 years, male 13.2
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 13.2
GTEX-117YX-0826-SM-5H11J 50-59 years, male 13.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

14.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 14.5
FF:10014-101C5 62,83,84 years, mixed 14.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.