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CHMP5

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:75.7TPM
GTEx:25.5RPKM
FANTOM5:129.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA042883

  

Antibody HPA056437

  

Antibody CAB033874

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 Medium   Medium   Low  

Peripheral nerve/ganglion

 Not detected   Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

75.7
overview Male, age 54 Sample 1
TPM: 90.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 75.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 68.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 113.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 62.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 58.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 75.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 70
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 62.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 80.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 90.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 76
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 61.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

25.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 22.4
Samples: 149

Max RPKM: 34.4
Min RPKM: 14.2
Std RPKM: 3.4
Median RPKM: 22.1
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 34.4
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 33.8
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 32.2
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 30.8
GTEX-145LS-2926-SM-5O99G 60-69 years, female 30.8
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 29.0
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 28.9
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 28.8
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 28.7
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 27.6
Show all
Colon - Transverse
RPKM: 27.9
Samples: 196

Max RPKM: 52.9
Min RPKM: 15.3
Std RPKM: 6.9
Median RPKM: 27.3
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 52.9
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 52.6
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 51.1
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 45.6
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 45.3
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 41.6
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 40.6
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 40.0
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 39.6
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 38.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

129.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 129.6
FF:10014-101C5 62,83,84 years, mixed 129.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.