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CDV3

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:80.5TPM
GTEx:33.7RPKM
FANTOM5:177.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA029761

  

Antibody HPA029762

  

Antibody HPA029763

  

Endothelial cells

 Low   Not detected   Not detected  

Glandular cells

 Medium   Not detected   Low  

Peripheral nerve/ganglion

 Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

80.5
overview Male, age 54 Sample 1
TPM: 88.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 72.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 78.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 78.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 77.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 68.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 71.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 82.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 102.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 89.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 84.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 83.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 70
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

33.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 33.7
Samples: 149

Max RPKM: 74.5
Min RPKM: 19.1
Std RPKM: 8.6
Median RPKM: 31.6
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 74.5
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 56.9
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 55.9
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 54.2
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 53.8
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 51.9
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 50.3
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 50.0
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 47.1
GTEX-Y3I4-1126-SM-4TT7Y 50-59 years, male 46.9
Show all
Colon - Transverse
RPKM: 33.7
Samples: 196

Max RPKM: 68.2
Min RPKM: 18.4
Std RPKM: 8.0
Median RPKM: 33.3
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 68.2
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 59.6
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 59.1
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 57.5
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 55.1
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 53.7
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 52.6
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 52.4
GTEX-144GM-1226-SM-5LU52 20-29 years, male 51.0
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 50.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

177.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 177.5
FF:10014-101C5 62,83,84 years, mixed 177.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.