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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:42.4TPM
GTEx:10.2RPKM
FANTOM5:91.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA001169

  

Antibody CAB011233

  

Endothelial cells

 Low   Low  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Medium   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

42.4
overview Male, age 54 Sample 1
TPM: 64.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 40.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 44.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 39
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 37.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 37.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 24.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 36.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 41.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 43.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 45.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 53.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 42
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.2
Samples: 149

Max RPKM: 19.2
Min RPKM: 4.7
Std RPKM: 2.7
Median RPKM: 11.0
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 19.2
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 18.5
GTEX-145LS-2926-SM-5O99G 60-69 years, female 17.5
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 16.9
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 16.9
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 16.1
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 16.1
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 16.0
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 15.9
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 15.8
Show all
Colon - Transverse
RPKM: 9.4
Samples: 196

Max RPKM: 18.3
Min RPKM: 2.4
Std RPKM: 2.4
Median RPKM: 9.2
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 18.3
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 16.6
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 16.1
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 15.7
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 15.1
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 15.0
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 14.8
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 14.7
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 14.5
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 14.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

91.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 91.7
FF:10014-101C5 62,83,84 years, mixed 91.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.