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AAAS

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:15.3TPM
GTEx:23.3RPKM
FANTOM5:29.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Not detected
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA040086

  

Endothelial cells

 Low  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

15.3
overview Male, age 54 Sample 1
TPM: 12.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 9.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 7.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 20.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 21.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 15.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 16.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 22.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 24
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

23.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 27.2
Samples: 149

Max RPKM: 51.4
Min RPKM: 11.2
Std RPKM: 9.0
Median RPKM: 26.2
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 51.4
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 47.0
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 45.7
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 45.5
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 44.4
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 44.0
GTEX-145LS-2926-SM-5O99G 60-69 years, female 43.7
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 43.2
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 43.1
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 41.6
Show all
Colon - Transverse
RPKM: 20.4
Samples: 196

Max RPKM: 41.5
Min RPKM: 3.9
Std RPKM: 5.2
Median RPKM: 19.7
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 41.5
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 37.1
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 36.9
GTEX-11GSP-1626-SM-5986N 60-69 years, female 33.1
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 33.1
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 33.0
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 33.0
GTEX-P78B-1726-SM-3P5ZV 40-49 years, female 32.8
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 32.6
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 31.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

29.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 29.1
FF:10014-101C5 62,83,84 years, mixed 29.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.