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COLON - Expression summary

RNA expression
HPA:12.0TPM
GTEx:15.3RPKM
FANTOM5:57.6Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

12.0
overview Male, age 54 Sample 1
TPM: 12.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 9.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 8.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 7.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 8.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 13.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 18
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 16.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 16.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 12.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

15.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 16.8
Samples: 149

Max RPKM: 48.2
Min RPKM: 6.3
Std RPKM: 6.4
Median RPKM: 15.5
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 48.2
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 39.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 38.2
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 35.1
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 34.9
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 32.9
GTEX-XXEK-1826-SM-4BRVC 50-59 years, male 28.6
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 28.2
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 27.4
GTEX-12696-1926-SM-5EGJT 60-69 years, male 27.2
Show all
Colon - Transverse
RPKM: 14.1
Samples: 196

Max RPKM: 48.9
Min RPKM: 3.0
Std RPKM: 5.3
Median RPKM: 13.3
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 48.9
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 33.3
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 29.3
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 28.6
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 26.2
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 26.2
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 25.1
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 24.1
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 23.9
GTEX-XYKS-2226-SM-4E3IU 60-69 years, female 22.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

57.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 57.6
FF:10014-101C5 62,83,84 years, mixed 57.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.