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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.4TPM
GTEx:3.6RPKM
FANTOM5:52.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA038309

  

Antibody HPA038310

  

Antibody CAB009333

  

Antibody CAB016291

  

Endothelial cells

 Not detected   Low   Medium   Not detected  

Glandular cells

 Low   Not detected   Medium   High  

Peripheral nerve/ganglion

 Not detected   Not detected   Medium   Not detected  
       
       
       

COLON - HPA RNA-seq

Average TPM

17.4
overview Male, age 54 Sample 1
TPM: 20.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 14.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 11
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 11.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 23.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 16.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 28.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 24
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.7
Samples: 149

Max RPKM: 3.0
Min RPKM: 0.0
Std RPKM: 0.6
Median RPKM: 0.5
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 3.0
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 2.8
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 2.6
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 2.6
GTEX-V955-1726-SM-4JBHF 60-69 years, male 2.6
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 2.5
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 2.4
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 2.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 2.2
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 2.0
Show all
Colon - Transverse
RPKM: 5.9
Samples: 196

Max RPKM: 16.9
Min RPKM: 0.0
Std RPKM: 4.2
Median RPKM: 6.3
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 16.9
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 15.0
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 14.8
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 14.5
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 14.0
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 13.8
GTEX-12C56-0626-SM-5EGGC 20-29 years, male 13.7
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 13.7
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 12.7
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 12.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

52.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 52.2
FF:10014-101C5 62,83,84 years, mixed 52.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.