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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:45.0TPM
GTEx:15.3RPKM
FANTOM5:535.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA017369

  

Antibody CAB000023

  

Antibody CAB040544

  

Antibody CAB055506

  

Antibody CAB058688

  

Endothelial cells

 Not detected   Not detected   Not detected   Not detected   Not detected  

Glandular cells

 Medium   Medium   Medium   Medium   Medium  

Peripheral nerve/ganglion

 Medium   Not detected   Not detected   Low  
         
         
         

COLON - HPA RNA-seq

Average TPM

45.0
overview Male, age 54 Sample 1
TPM: 72.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 98.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 55.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 20.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 101.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 19.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 40
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 16.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 41
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 69.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 22.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 25.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

15.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 2.9
Samples: 149

Max RPKM: 35.6
Min RPKM: 0.0
Std RPKM: 3.6
Median RPKM: 2.1
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 35.6
GTEX-XBED-1726-SM-47JYO 60-69 years, male 20.7
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 16.3
GTEX-12696-1926-SM-5EGJT 60-69 years, male 10.8
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 8.4
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 7.4
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 7.3
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 7.0
GTEX-V955-1726-SM-4JBHF 60-69 years, male 6.5
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 6.0
Show all
Colon - Transverse
RPKM: 24.8
Samples: 196

Max RPKM: 105.1
Min RPKM: 0.0
Std RPKM: 21.5
Median RPKM: 21.6
GTEX-QCQG-1626-SM-48U26 50-59 years, female 105.1
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 103.4
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 88.2
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 80.2
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 79.3
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 71.2
GTEX-W5WG-2426-SM-4LMI6 50-59 years, female 69.6
GTEX-11DXX-1826-SM-5H126 60-69 years, female 69.4
GTEX-YB5E-1626-SM-5IFIQ 40-49 years, male 66.2
GTEX-1399U-1926-SM-5IFH7 50-59 years, female 65.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

535.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 535.9
FF:10014-101C5 62,83,84 years, mixed 535.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.