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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:127.4TPM
GTEx:128.0RPKM
FANTOM5:149.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA002907

  

Antibody HPA005835

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 High   Medium  
   
   

COLON - HPA RNA-seq

Average TPM

127.4
overview Male, age 54 Sample 1
TPM: 124.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 173.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 170.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 125.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 70.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 146.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 151.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 99.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 112.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 142.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 124.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 128.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 86.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

128.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 113.3
Samples: 149

Max RPKM: 224.1
Min RPKM: 39.6
Std RPKM: 31.1
Median RPKM: 112.1
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 224.1
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 190.1
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 181.8
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 166.9
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 164.4
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 163.0
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 162.9
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 161.0
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 159.1
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 157.2
Show all
Colon - Transverse
RPKM: 139.2
Samples: 196

Max RPKM: 315.6
Min RPKM: 21.5
Std RPKM: 42.8
Median RPKM: 140.0
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 315.6
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 270.0
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 240.1
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 233.2
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 233.1
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 232.0
GTEX-ZT9W-1826-SM-51MQX 50-59 years, male 227.0
GTEX-P4QT-1426-SM-3NMCX 50-59 years, female 225.9
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 214.4
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 205.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

149.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 149.8
FF:10014-101C5 62,83,84 years, mixed 149.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.