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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:22.3TPM
GTEx:25.8RPKM
FANTOM5:24.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Not available
 
 

Antibody staining

Antibody HPA042865

  

Antibody HPA054322

  

Endothelial cells

 Medium   Low  

Glandular cells

 Low   Medium  

Peripheral nerve/ganglion

 Low  
      
   
   

COLON - HPA RNA-seq

Average TPM

22.3
overview Male, age 54 Sample 1
TPM: 15.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 17.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 8.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 27
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 50
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 22.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 41.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 14.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 20.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 26.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 20.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

25.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 35.8
Samples: 149

Max RPKM: 57.9
Min RPKM: 18.2
Std RPKM: 5.7
Median RPKM: 35.1
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 57.9
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 54.5
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 51.9
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 50.3
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 48.4
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 48.1
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 46.4
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 45.9
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 45.4
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 45.4
Show all
Colon - Transverse
RPKM: 18.3
Samples: 196

Max RPKM: 50.0
Min RPKM: 2.3
Std RPKM: 12.4
Median RPKM: 14.8
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 50.0
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 47.3
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 45.2
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 44.5
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 43.2
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 43.0
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 42.3
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 41.9
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 41.8
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 41.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

24.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 24.2
FF:10014-101C5 62,83,84 years, mixed 24.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.