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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:34.0TPM
GTEx:18.1RPKM
FANTOM5:40.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA006385

  

Antibody CAB004611

  

Endothelial cells

 High   High  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 High  
      
   
   

COLON - HPA RNA-seq

Average TPM

34.0
overview Male, age 54 Sample 1
TPM: 36.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 31.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 30.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 38.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 26.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 40.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 29.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 31.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 33.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 36.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 39.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 43.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 24.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

18.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 19.3
Samples: 149

Max RPKM: 29.4
Min RPKM: 5.3
Std RPKM: 4.1
Median RPKM: 19.8
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 29.4
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 27.2
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 26.9
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 26.4
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 26.2
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 25.8
GTEX-11GS4-1826-SM-5HL4T 60-69 years, male 25.6
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 25.2
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 25.2
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 25.0
Show all
Colon - Transverse
RPKM: 17.1
Samples: 196

Max RPKM: 29.3
Min RPKM: 2.8
Std RPKM: 3.3
Median RPKM: 16.8
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 29.3
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 25.8
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 24.8
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 24.2
GTEX-PX3G-1426-SM-48U1J 20-29 years, female 24.1
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 24.0
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 23.4
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 22.7
GTEX-Q734-1126-SM-48TZY 40-49 years, female 22.7
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 22.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

40.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 40.0
FF:10014-101C5 62,83,84 years, mixed 40.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.