Fields »
ABOUT
HELP
BLOG
CAMTA2

COLON - Expression summary

RNA expression
HPA:11.4TPM
GTEx:21.9RPKM
FANTOM5:22.0Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

11.4
overview Male, age 54 Sample 1
TPM: 12.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 11.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 9.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 12
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 13.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 10.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 23.0
Samples: 149

Max RPKM: 34.1
Min RPKM: 15.6
Std RPKM: 3.0
Median RPKM: 23.1
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 34.1
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 30.8
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 30.4
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 29.6
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 29.1
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 28.9
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 28.2
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 28.2
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 28.1
GTEX-V955-1726-SM-4JBHF 60-69 years, male 27.7
Show all
Colon - Transverse
RPKM: 21.1
Samples: 196

Max RPKM: 36.9
Min RPKM: 11.0
Std RPKM: 2.9
Median RPKM: 21.0
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 36.9
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 30.2
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 30.1
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 28.0
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 27.6
GTEX-XYKS-2226-SM-4E3IU 60-69 years, female 27.4
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 26.9
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 26.7
GTEX-S4P3-1226-SM-4AD4Y 50-59 years, female 26.7
GTEX-RU1J-1326-SM-46MUL 20-29 years, female 26.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

22.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 22.0
FF:10014-101C5 62,83,84 years, mixed 22.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.