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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.4TPM
GTEx:7.5RPKM
FANTOM5:15.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA003282

  

Antibody CAB020828

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

13.4
overview Male, age 54 Sample 1
TPM: 13.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 18.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 10.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 8.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 7.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 7.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 13.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 43.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 11.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 7.8
Samples: 149

Max RPKM: 24.1
Min RPKM: 2.8
Std RPKM: 3.0
Median RPKM: 7.4
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 24.1
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 23.0
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 22.1
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 16.5
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 12.7
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 12.1
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 11.6
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 11.6
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 11.4
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 11.2
Show all
Colon - Transverse
RPKM: 7.2
Samples: 196

Max RPKM: 23.3
Min RPKM: 2.0
Std RPKM: 3.5
Median RPKM: 6.2
GTEX-R55G-1226-SM-48FDC 40-49 years, female 23.3
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 22.8
GTEX-YB5E-1626-SM-5IFIQ 40-49 years, male 17.7
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 16.9
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 16.8
GTEX-13VXT-2426-SM-5LU46 20-29 years, female 15.2
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 14.6
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 13.8
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 13.7
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 13.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

15.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 15.1
FF:10014-101C5 62,83,84 years, mixed 15.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.