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NCOA7

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:31.0TPM
GTEx:5.9RPKM
FANTOM5:75.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Not detected
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA030289

  

Antibody HPA030290

  

Antibody HPA030291

  

Antibody HPA030292

  

Endothelial cells

 High   Not detected   High   Medium  

Glandular cells

 Low   Not detected   Not detected   Medium  

Peripheral nerve/ganglion

 Medium   High   High   Low  
       
       
       

COLON - HPA RNA-seq

Average TPM

31.0
overview Male, age 54 Sample 1
TPM: 35.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 26.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 18.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 45.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 30.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 43.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 34.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 18
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 31.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 27.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 34.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 27.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 27.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.8
Samples: 149

Max RPKM: 20.7
Min RPKM: 1.8
Std RPKM: 2.9
Median RPKM: 5.0
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 20.7
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 18.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 17.1
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 16.0
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 13.9
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 13.2
GTEX-145LS-2926-SM-5O99G 60-69 years, female 11.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 10.3
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 10.2
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 10.0
Show all
Colon - Transverse
RPKM: 6.1
Samples: 196

Max RPKM: 27.0
Min RPKM: 1.8
Std RPKM: 4.0
Median RPKM: 4.7
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 27.0
GTEX-144GM-1226-SM-5LU52 20-29 years, male 23.7
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 23.5
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 19.3
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 18.6
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 17.7
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 17.4
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 17.4
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 17.2
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 17.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

75.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 75.7
FF:10014-101C5 62,83,84 years, mixed 75.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.