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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:9.4TPM
GTEx:13.4RPKM
FANTOM5:25.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Not detected
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA050530

  

Antibody HPA054147

  

Endothelial cells

 Medium   Medium  

Glandular cells

 Not detected   Low  

Peripheral nerve/ganglion

 Low   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

9.4
overview Male, age 54 Sample 1
TPM: 7.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 5.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 7.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 38.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 4.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 20.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 7.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 12.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 5.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 20.4
Samples: 149

Max RPKM: 43.1
Min RPKM: 2.9
Std RPKM: 7.3
Median RPKM: 20.8
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 43.1
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 38.7
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 38.6
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 37.2
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 35.6
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 34.3
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 33.6
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 33.4
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 32.0
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 31.9
Show all
Colon - Transverse
RPKM: 8.0
Samples: 196

Max RPKM: 33.8
Min RPKM: 0.2
Std RPKM: 7.8
Median RPKM: 5.4
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 33.8
GTEX-13VXT-2426-SM-5LU46 20-29 years, female 27.3
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 26.0
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 25.9
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 25.5
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 24.8
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 24.7
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 24.6
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 23.7
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 23.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

25.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 25.1
FF:10014-101C5 62,83,84 years, mixed 25.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.