We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
WASF1
  • TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:49.0RPKM
FANTOM5:367.0Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:High
 

Antibody staining

Antibody HPA004105

 

Antibody CAB022161

 

Glial cells

Not detected   Low  

Neuronal cells

Low   High  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

49.0

GTEx sample id

Sample description

RPKM

Brain - Caudate (basal ganglia)
RPKM: 49.0
Samples: 117

Max RPKM: 150.5
Min RPKM: 4.2
Std RPKM: 28.2
Median RPKM: 50.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 150.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 106.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 105.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 93.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 92.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 90.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 88.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 88.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 88.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 87.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 86.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 84.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 80.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 80.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 79.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 79.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 78.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 77.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 77.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 76.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 76.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 75.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 74.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 74.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 74.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 73.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 72.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 72.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 72.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 71.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 71.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 71.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 69.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 69.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 68.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 68.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 66.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 66.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 65.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 64.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 64.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 64.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 62.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 61.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 61.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 60.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 58.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 56.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 56.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 56.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 56.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 55.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 54.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 52.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 52.5
GTEX-RVPU-0011-R5A-SM-2XCAD 50-59 years, male 52.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 51.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 51.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 50.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 49.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 49.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 46.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 45.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 45.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 45.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 44.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 40.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 40.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 38.1
GTEX-OHPN-0011-R5A-SM-2I5FF 60-69 years, female 37.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 37.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 36.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 36.5
GTEX-12WSB-0011-R5b-SM-5GU67 60-69 years, female 36.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 36.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 35.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 33.6
GTEX-XOTO-0011-R5A-SM-4B657 50-59 years, male 33.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 32.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 32.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 28.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 27.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 26.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 26.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 26.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 26.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 25.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 25.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 23.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 22.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 21.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 21.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 20.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 20.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 20.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 19.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 18.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 16.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 16.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 15.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 14.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 14.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 13.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 12.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 12.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 10.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 10.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 9.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 9.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 9.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 8.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 7.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 6.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 5.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 4.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 4.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4.2
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

367.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 261.0
FF:10164-103B2 76 years, female 261.0

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.