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PRPF4B

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.9TPM
GTEx:16.0RPKM
FANTOM5:118.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA020638

  

Endothelial cells

 Low  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

13.9
overview Male, age 54 Sample 1
TPM: 15.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 14.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 11.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 13.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 13.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 15.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 16.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 16.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

16.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 15.8
Samples: 149

Max RPKM: 25.5
Min RPKM: 7.2
Std RPKM: 2.9
Median RPKM: 15.6
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 25.5
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 25.5
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 24.3
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 22.1
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 22.1
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 21.0
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 20.8
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 20.5
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 20.0
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 19.8
Show all
Colon - Transverse
RPKM: 16.3
Samples: 196

Max RPKM: 24.5
Min RPKM: 8.7
Std RPKM: 2.4
Median RPKM: 16.2
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 24.5
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 23.1
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 22.9
GTEX-QEL4-1926-SM-4R1JI 50-59 years, male 22.3
GTEX-139YR-2126-SM-5KM11 50-59 years, male 21.2
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 21.2
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 21.1
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 21.0
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 20.7
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 20.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

118.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 118.2
FF:10014-101C5 62,83,84 years, mixed 118.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.