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HMGCS1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:53.9TPM
GTEx:21.1RPKM
FANTOM5:16.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA036913

  

Antibody HPA036914

  

Antibody CAB032907

  

Endothelial cells

 Not detected   Not detected   Medium  

Glandular cells

 High   High   Medium  

Peripheral nerve/ganglion

 Not detected   Low   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

53.9
overview Male, age 54 Sample 1
TPM: 156.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 24.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 33.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 47.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 13.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 39
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 75.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 34
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 43.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 58.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 107.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 36.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 32.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.0
Samples: 149

Max RPKM: 41.4
Min RPKM: 4.5
Std RPKM: 3.4
Median RPKM: 8.5
GTEX-XBED-1726-SM-47JYO 60-69 years, male 41.4
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 19.2
GTEX-V955-1726-SM-4JBHF 60-69 years, male 17.9
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 17.3
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 17.2
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 15.0
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 12.3
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 12.1
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 12.0
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 12.0
Show all
Colon - Transverse
RPKM: 30.3
Samples: 196

Max RPKM: 192.6
Min RPKM: 5.3
Std RPKM: 30.1
Median RPKM: 22.1
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 192.6
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 187.9
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 139.1
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 130.2
GTEX-144GN-1126-SM-5LU33 50-59 years, male 122.4
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 115.3
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 114.9
GTEX-XBED-1526-SM-4AT5W 60-69 years, male 109.0
GTEX-QV31-0826-SM-4R1KR 30-39 years, male 96.1
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 95.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

16.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 16.0
FF:10014-101C5 62,83,84 years, mixed 16.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.