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CDX1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:132.2TPM
GTEx:45.6RPKM
FANTOM5:163.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA055196

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

132.2
overview Male, age 54 Sample 1
TPM: 151.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 136.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 140.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 137.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 52.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 100.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 172.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 177.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 95.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 162.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 150.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 127.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 115
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

45.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.4
Samples: 149

Max RPKM: 30.5
Min RPKM: 0.0
Std RPKM: 4.9
Median RPKM: 0.1
GTEX-V955-1726-SM-4JBHF 60-69 years, male 30.5
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 29.4
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 28.4
GTEX-XBED-1726-SM-47JYO 60-69 years, male 24.5
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 18.4
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 13.7
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 7.5
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 7.4
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 4.5
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 4.4
Show all
Colon - Transverse
RPKM: 79.1
Samples: 196

Max RPKM: 229.4
Min RPKM: 0.0
Std RPKM: 59.5
Median RPKM: 93.1
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 229.4
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 187.6
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 179.9
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 176.6
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 170.3
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 165.4
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 165.0
GTEX-11DXX-1826-SM-5H126 60-69 years, female 164.1
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 162.8
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 162.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

163.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 163.7
FF:10014-101C5 62,83,84 years, mixed 163.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.