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ABCB6

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:4.2TPM
GTEx:15.2RPKM
FANTOM5:7.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA046723

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

4.2
overview Male, age 54 Sample 1
TPM: 4.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 6.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 5.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 4.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 4.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

15.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 17.1
Samples: 149

Max RPKM: 41.1
Min RPKM: 6.0
Std RPKM: 6.5
Median RPKM: 15.7
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 41.1
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 39.2
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 35.8
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 35.0
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 34.2
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 33.1
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 30.6
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 29.6
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 29.5
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 29.1
Show all
Colon - Transverse
RPKM: 13.8
Samples: 196

Max RPKM: 49.3
Min RPKM: 3.9
Std RPKM: 5.4
Median RPKM: 13.2
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 49.3
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 29.5
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 29.1
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 29.1
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 28.6
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 27.9
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 24.2
GTEX-144GN-1126-SM-5LU33 50-59 years, male 24.2
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 24.2
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 23.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

7.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 7.0
FF:10014-101C5 62,83,84 years, mixed 7.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.