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ODC1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:64.8TPM
GTEx:26.0RPKM
FANTOM5:21.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
 

Antibody staining

Antibody HPA001536

  

Antibody CAB035996

  

Endothelial cells

 Not detected   Low  

Glandular cells

 Not detected   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

64.8
overview Male, age 54 Sample 1
TPM: 57.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 39.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 55
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 50.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 59.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 151.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 78.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 46.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 55.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 81.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 60
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 53.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 54.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

26.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 24.8
Samples: 149

Max RPKM: 82.4
Min RPKM: 11.3
Std RPKM: 9.9
Median RPKM: 21.8
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 82.4
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 56.6
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 53.0
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 49.9
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 47.2
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 46.6
GTEX-XBED-1726-SM-47JYO 60-69 years, male 44.2
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 43.8
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 43.2
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 42.2
Show all
Colon - Transverse
RPKM: 26.8
Samples: 196

Max RPKM: 196.2
Min RPKM: 7.5
Std RPKM: 18.3
Median RPKM: 22.2
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 196.2
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 133.7
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 96.7
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 69.7
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 60.0
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 56.1
GTEX-QV31-0826-SM-4R1KR 30-39 years, male 53.6
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 53.6
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 49.7
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 49.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

21.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 21.6
FF:10014-101C5 62,83,84 years, mixed 21.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.