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COLON - Expression summary

RNA expression
HPA:2.4TPM
GTEx:2.9RPKM
FANTOM5:11.6Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA007421

  

Antibody HPA008061

  

Endothelial cells

 Low   Not detected  

Glandular cells

 Medium   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

2.4
overview Male, age 54 Sample 1
TPM: 1.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 4.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.9
Samples: 149

Max RPKM: 6.4
Min RPKM: 2.5
Std RPKM: 0.7
Median RPKM: 3.8
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 6.4
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 5.7
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 5.6
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 5.5
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 5.3
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 5.2
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 5.2
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 5.2
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 5.1
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 5.1
Show all
Colon - Transverse
RPKM: 2.2
Samples: 196

Max RPKM: 5.7
Min RPKM: 0.4
Std RPKM: 1.2
Median RPKM: 1.7
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 5.7
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 5.5
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 5.1
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 5.1
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 5.0
GTEX-117YX-0826-SM-5H11J 50-59 years, male 4.6
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 4.6
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 4.5
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 4.4
GTEX-SNMC-1126-SM-4DM5M 20-29 years, male 4.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

11.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 11.6
FF:10014-101C5 62,83,84 years, mixed 11.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.