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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.9TPM
GTEx:4.2RPKM
FANTOM5:2.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
 

Antibody staining

Antibody HPA041710

  

Antibody HPA041796

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

2.9
overview Male, age 54 Sample 1
TPM: 2.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 2.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 4.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.9
Samples: 149

Max RPKM: 11.1
Min RPKM: 1.5
Std RPKM: 1.9
Median RPKM: 4.6
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 11.1
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 10.6
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 10.5
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 10.5
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 10.1
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 9.5
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 9.2
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 8.9
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 8.9
GTEX-145LS-2926-SM-5O99G 60-69 years, female 8.3
Show all
Colon - Transverse
RPKM: 3.6
Samples: 196

Max RPKM: 9.8
Min RPKM: 1.1
Std RPKM: 1.2
Median RPKM: 3.4
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 9.8
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 7.4
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 7.4
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 6.8
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 6.3
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 6.2
GTEX-P78B-1726-SM-3P5ZV 40-49 years, female 5.9
GTEX-Q734-1126-SM-48TZY 40-49 years, female 5.9
GTEX-131XE-0826-SM-5HL9W 50-59 years, male 5.8
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 5.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

2.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 2.3
FF:10014-101C5 62,83,84 years, mixed 2.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.