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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:18.8TPM
GTEx:4.0RPKM
FANTOM5:11.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Low
Peripheral nerve/ganglion:Not available
 
 

Antibody staining

Antibody HPA005757

  

Antibody HPA022264

  

Antibody CAB033926

  

Endothelial cells

 Medium   Low   Medium  

Glandular cells

 High   High   Low  

Peripheral nerve/ganglion

 Medium   Medium  
        
     
     
     

COLON - HPA RNA-seq

Average TPM

18.8
overview Male, age 54 Sample 1
TPM: 19.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 25.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 12
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 15
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 40.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 12.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 14.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 30.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 22.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 9.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.7
Samples: 149

Max RPKM: 4.2
Min RPKM: 0.0
Std RPKM: 0.7
Median RPKM: 0.5
GTEX-V955-1726-SM-4JBHF 60-69 years, male 4.2
GTEX-XBED-1726-SM-47JYO 60-69 years, male 3.6
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 3.6
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 3.6
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 3.5
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 3.3
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 2.6
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 2.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 1.7
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 1.7
Show all
Colon - Transverse
RPKM: 6.5
Samples: 196

Max RPKM: 26.8
Min RPKM: 0.1
Std RPKM: 5.5
Median RPKM: 5.7
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 26.8
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 26.2
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 22.4
GTEX-144GN-1126-SM-5LU33 50-59 years, male 22.0
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 20.7
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 20.2
GTEX-1128S-1626-SM-5H12O 60-69 years, female 20.0
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 19.7
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 17.5
GTEX-QMRM-1226-SM-447C6 50-59 years, male 17.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

11.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 11.3
FF:10014-101C5 62,83,84 years, mixed 11.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.