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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:46.7TPM
GTEx:42.2RPKM
FANTOM5:66.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Glandular cells:High
Endothelial cells:Medium
Peripheral nerve/ganglion:Not available
 
 

Antibody staining

Antibody HPA004799

  

Antibody HPA022271

  

Antibody CAB019284

  

Glandular cells

 High   High   High  

Endothelial cells

 Low   Medium  

Peripheral nerve/ganglion

 Medium  
        
     
     
     

COLON - HPA RNA-seq

Average TPM

46.7
overview Male, age 54 Sample 1
TPM: 44.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 40.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 62.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 101
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 17
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 28.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 26.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 37.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 24.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 66.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 35.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 71.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 51.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

42.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 16.5
Samples: 149

Max RPKM: 32.0
Min RPKM: 8.0
Std RPKM: 3.9
Median RPKM: 15.9
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 32.0
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 30.7
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 26.9
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 26.2
GTEX-V955-1726-SM-4JBHF 60-69 years, male 25.6
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 25.3
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 24.9
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 23.0
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 22.4
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 21.8
Show all
Colon - Transverse
RPKM: 61.7
Samples: 196

Max RPKM: 155.6
Min RPKM: 3.7
Std RPKM: 38.5
Median RPKM: 62.8
GTEX-P4QT-1426-SM-3NMCX 50-59 years, female 155.6
GTEX-13111-0726-SM-5DUVE 50-59 years, male 150.5
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 146.5
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 142.0
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 140.0
GTEX-ZT9W-1826-SM-51MQX 50-59 years, male 135.1
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 132.2
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 131.6
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 127.7
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 122.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

66.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 66.1
FF:10014-101C5 62,83,84 years, mixed 66.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.