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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:20.9TPM
GTEx:1.6RPKM
FANTOM5:20.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA039959

  

Antibody HPA040691

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 High   Low  
   
   

COLON - HPA RNA-seq

Average TPM

20.9
overview Male, age 54 Sample 1
TPM: 16
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 17.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 20.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 22.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 19
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 30
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 22.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 18
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 29.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 28.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 24.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.0
Samples: 149

Max RPKM: 1.8
Min RPKM: 0.2
Std RPKM: 0.3
Median RPKM: 1.0
GTEX-147JS-2626-SM-5S2UX 60-69 years, male 1.8
GTEX-1212Z-1826-SM-5FQSH 60-69 years, male 1.7
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 1.6
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 1.6
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 1.6
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 1.6
GTEX-ZYFG-1826-SM-5GZWX 60-69 years, female 1.6
GTEX-117XS-2226-SM-5GIE1 60-69 years, male 1.5
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 1.5
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 1.5
Show all
Colon - Transverse
RPKM: 2.0
Samples: 196

Max RPKM: 4.4
Min RPKM: 0.3
Std RPKM: 0.9
Median RPKM: 1.9
GTEX-13QBU-1826-SM-5IJG3 40-49 years, female 4.4
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 4.2
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 4.2
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 4.0
GTEX-YB5E-1626-SM-5IFIQ 40-49 years, male 4.0
GTEX-11DXZ-1726-SM-5H12M 50-59 years, male 3.9
GTEX-13111-0726-SM-5DUVE 50-59 years, male 3.8
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 3.8
GTEX-12BJ1-2126-SM-5BC5O 60-69 years, male 3.7
GTEX-13FTW-1826-SM-5IJEN 40-49 years, male 3.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

20.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 20.3
FF:10014-101C5 62,83,84 years, mixed 20.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.