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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:29.2TPM
GTEx:28.4RPKM
FANTOM5:56.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA010649

  

Endothelial cells

 Low  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

29.2
overview Male, age 54 Sample 1
TPM: 36.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 29.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 38.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 41.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 31.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 30.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 22.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 23.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 26.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 29
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 23.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 22.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 23.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

28.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 27.4
Samples: 149

Max RPKM: 44.4
Min RPKM: 17.9
Std RPKM: 4.5
Median RPKM: 26.8
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 44.4
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 41.2
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 40.9
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 40.5
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 36.4
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 35.8
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 35.6
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 35.4
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 34.8
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 34.8
Show all
Colon - Transverse
RPKM: 29.1
Samples: 196

Max RPKM: 58.2
Min RPKM: 8.1
Std RPKM: 6.5
Median RPKM: 28.2
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 58.2
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 49.6
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 49.3
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 48.4
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 45.1
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 44.3
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 44.2
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 44.0
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 43.1
GTEX-139TS-1926-SM-5IJFO 60-69 years, male 41.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

56.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 56.6
FF:10014-101C5 62,83,84 years, mixed 56.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.