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LBP

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:0.2TPM
GTEx:0.4RPKM
FANTOM5:3.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA001508

  

Antibody CAB025905

  

Endothelial cells

 Not detected   High  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Low  
      
   
   
   

COLON - HPA RNA-seq

Average TPM

0.2
overview Male, age 54 Sample 1
TPM: 0.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 0.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 0
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 0.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 0.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.3
Samples: 149

Max RPKM: 17.3
Min RPKM: 0.0
Std RPKM: 1.5
Median RPKM: 0.0
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 17.3
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 5.5
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 2.1
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 1.8
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 1.7
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 1.6
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 1.6
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 1.4
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 1.1
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 1.0
Show all
Colon - Transverse
RPKM: 0.5
Samples: 196

Max RPKM: 32.3
Min RPKM: 0.0
Std RPKM: 2.8
Median RPKM: 0.0
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 32.3
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 19.5
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 10.5
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 7.1
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 6.8
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 3.9
GTEX-144GN-1126-SM-5LU33 50-59 years, male 1.9
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 1.9
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 1.6
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 1.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

3.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 3.7
FF:10014-101C5 62,83,84 years, mixed 3.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.