We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
ATPIF1
  • premium

    TISSUE

  • premium

    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:41.5RPKM
FANTOM5:710.0Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Medium
 

Antibody staining

Antibody HPA027999

 

Glial cells

Not detected  

Neuronal cells

Medium  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

41.5

GTEx sample id

Sample description

RPKM

Brain - Caudate (basal ganglia)
RPKM: 41.5
Samples: 117

Max RPKM: 72.4
Min RPKM: 10.0
Std RPKM: 13.9
Median RPKM: 42.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 72.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 69.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 68.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 67.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 67.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 66.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 63.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 62.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 62.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 62.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 61.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 59.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 58.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 58.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 56.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 56.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 56.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 56.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 55.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 55.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 54.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 54.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 54.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 54.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 53.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 52.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 52.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 51.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 50.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 50.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 50.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 50.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 49.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 49.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 48.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 48.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 48.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 48.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 48.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 48.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 47.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 47.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 46.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 46.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 46.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 46.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 46.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 45.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 45.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 44.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 44.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 44.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 44.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 43.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 43.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 43.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 42.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 42.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 42.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 42.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 42.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 41.7
GTEX-12WSB-0011-R5b-SM-5GU67 60-69 years, female 41.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 41.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 40.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 40.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 39.9
GTEX-OHPN-0011-R5A-SM-2I5FF 60-69 years, female 39.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 39.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 38.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 38.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 38.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 37.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 37.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 37.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 37.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 36.9
GTEX-XOTO-0011-R5A-SM-4B657 50-59 years, male 36.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 36.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 36.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 36.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 34.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 33.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 32.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 32.7
GTEX-RVPU-0011-R5A-SM-2XCAD 50-59 years, male 32.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 32.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 31.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 31.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 30.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 30.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 30.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 29.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 28.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 28.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 28.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 27.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 27.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 26.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 25.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 25.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 24.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 23.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 23.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 22.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 22.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 21.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 20.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 20.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 19.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 17.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 15.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 14.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 14.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 14.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 11.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 10.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

710.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 577.9
FF:10164-103B2 76 years, female 577.9

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.