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RBM39

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:44.5TPM
GTEx:54.5RPKM
FANTOM5:267.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA001591

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 High  
 
 

COLON - HPA RNA-seq

Average TPM

44.5
overview Male, age 54 Sample 1
TPM: 55.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 58.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 64.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 52.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 38.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 44.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 29
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 34.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 37.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 47
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 44.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 46.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 25.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

54.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 55.3
Samples: 149

Max RPKM: 84.3
Min RPKM: 32.7
Std RPKM: 10.3
Median RPKM: 53.8
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 84.3
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 84.1
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 83.8
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 81.3
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 76.7
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 74.8
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 73.5
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 73.2
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 72.1
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 71.2
Show all
Colon - Transverse
RPKM: 53.9
Samples: 196

Max RPKM: 76.8
Min RPKM: 25.5
Std RPKM: 8.4
Median RPKM: 52.6
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 76.8
GTEX-QEL4-1926-SM-4R1JI 50-59 years, male 75.9
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 75.7
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 75.2
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 73.3
GTEX-11NSD-1626-SM-5986U 20-29 years, male 70.6
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 69.7
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 69.6
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 69.6
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 68.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

267.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 267.3
FF:10014-101C5 62,83,84 years, mixed 267.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.