Tissue expression of RBM39 - Summary - The Human Protein Atlas

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RBM39

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TISSUE

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CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	RBM39
Gene description	RNA binding motif protein 39
Protein class	Plasma proteins Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	8
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General nuclear expression.

DATA RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data.
Reliability score	Supported based on 1 antibody. HPA001591
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	RBM39 (HGNC Symbol)
Synonyms	CAPER, CAPERalpha, CC1.3, fSAP59, HCC1, RNPC2
Description	RNA binding motif protein 39 (HGNC Symbol)
Entrez gene summary	This gene encodes a member of the U2AF65 family of proteins. The encoded protein is found in the nucleus, where it co-localizes with core spliceosomal proteins. It has been shown to play a role in both steroid hormone receptor-mediated transcription and alternative splicing, and it is also a transcriptional coregulator of the viral oncoprotein v-Rel. Multiple transcript variants have been observed for this gene. A related pseudogene has been identified on chromosome X. [provided by RefSeq, Aug 2011]
Chromosome	20
Cytoband	q11.22
Chromosome location (bp)	35703609 - 35742312
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000131051 (version 83.38)
Entrez gene	9584
UniProt	Q14498 (UniProt - Evidence at protein level)
neXtProt	NX_Q14498
Antibodypedia	RBM39 antibodies

PROTEIN BROWSER

RBM39-001	RBM39-002	RBM39-013	RBM39-015	RBM39-018	RBM39-020	RBM39-035	RBM39-039

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
RBM39-001 ENSP00000354437 ENST00000361162	Q14498 [Direct mapping] RNA-binding protein 39 Show all	Predicted intracellular proteins Plasma proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000166 [nucleotide binding] GO:0003676 [nucleic acid binding] GO:0003723 [RNA binding] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0005815 [microtubule organizing center] GO:0006351 [transcription, DNA-templated] GO:0006355 [regulation of transcription, DNA-templated] GO:0006396 [RNA processing] GO:0006397 [mRNA processing] GO:0008380 [RNA splicing] GO:0015630 [microtubule cytoskeleton] GO:0016607 [nuclear speck] GO:0044822 [poly(A) RNA binding] Show all	524 aa 58.7 kDa	No	0
RBM39-002 ENSP00000253363 ENST00000253363	Q14498 [Direct mapping] RNA-binding protein 39 Show all	Predicted intracellular proteins Plasma proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000166 [nucleotide binding] GO:0003676 [nucleic acid binding] GO:0003723 [RNA binding] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0005815 [microtubule organizing center] GO:0006351 [transcription, DNA-templated] GO:0006355 [regulation of transcription, DNA-templated] GO:0006396 [RNA processing] GO:0006397 [mRNA processing] GO:0008380 [RNA splicing] GO:0015630 [microtubule cytoskeleton] GO:0016607 [nuclear speck] GO:0044822 [poly(A) RNA binding] Show all	530 aa 59.4 kDa	No	0
RBM39-013 ENSP00000380527 ENST00000397370	A8MYG5 [Direct mapping] RNA-binding protein 39 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		95 aa 10.9 kDa	No	0
RBM39-015 ENSP00000436747 ENST00000528062	Q14498 [Direct mapping] RNA-binding protein 39 Show all	Predicted intracellular proteins Plasma proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000166 [nucleotide binding] GO:0003676 [nucleic acid binding] GO:0003723 [RNA binding] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0005815 [microtubule organizing center] GO:0006351 [transcription, DNA-templated] GO:0006355 [regulation of transcription, DNA-templated] GO:0006396 [RNA processing] GO:0006397 [mRNA processing] GO:0008380 [RNA splicing] GO:0015630 [microtubule cytoskeleton] GO:0016607 [nuclear speck] GO:0044822 [poly(A) RNA binding] Show all	508 aa 57.1 kDa	No	0
RBM39-018 ENSP00000393493 ENST00000434927	Q5QP22 [Direct mapping] RNA-binding protein 39 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0000166 [nucleotide binding] Show all	193 aa 23.1 kDa	No	0
RBM39-020 ENSP00000363150 ENST00000374038	Q5QP23 [Direct mapping] RNA-binding protein 39 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0000166 [nucleotide binding] GO:0003676 [nucleic acid binding] GO:0003723 [RNA binding] GO:0005634 [nucleus] GO:0006397 [mRNA processing] Show all	231 aa 27.1 kDa	No	0
RBM39-035 ENSP00000394824 ENST00000448303	H0Y4X3 [Direct mapping] RNA-binding protein 39 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0000166 [nucleotide binding] GO:0003676 [nucleic acid binding] GO:0003723 [RNA binding] GO:0005634 [nucleus] GO:0006397 [mRNA processing] Show all	337 aa 36.6 kDa	No	0
RBM39-039 ENSP00000405916 ENST00000426951	H0Y6I9 [Direct mapping] RNA-binding protein 39 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		86 aa 10.7 kDa	No	0

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