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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:8.4TPM
GTEx:10.4RPKM
FANTOM5:11.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:Not detected
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA007007

  

Antibody HPA026111

  

Antibody CAB005889

  

Antibody CAB058692

  

Endothelial cells

 High   High   High   High  

Glandular cells

 Not detected   Not detected   Low   Not detected  

Peripheral nerve/ganglion

 Not detected   Medium   Medium   Not detected  
       
       
       

COLON - HPA RNA-seq

Average TPM

8.4
overview Male, age 54 Sample 1
TPM: 4.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 5.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 18.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 7.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 10.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 6.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 13
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 3.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 8.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 11.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 7.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 12.5
Samples: 149

Max RPKM: 35.6
Min RPKM: 3.9
Std RPKM: 5.5
Median RPKM: 11.5
GTEX-ZVZQ-2626-SM-59HLB 60-69 years, female 35.6
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 30.2
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 27.7
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 23.7
GTEX-145LS-2926-SM-5O99G 60-69 years, female 23.0
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 22.3
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 21.8
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 21.8
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 21.6
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 21.3
Show all
Colon - Transverse
RPKM: 8.9
Samples: 196

Max RPKM: 32.4
Min RPKM: 1.4
Std RPKM: 6.2
Median RPKM: 6.8
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 32.4
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 27.6
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 26.6
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 26.1
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 25.6
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 25.6
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 24.9
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 24.3
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 24.3
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 22.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

11.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 11.5
FF:10014-101C5 62,83,84 years, mixed 11.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.