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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:11.0TPM
GTEx:8.8RPKM
FANTOM5:28.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
 

Antibody staining

Antibody HPA008208

  

Antibody HPA011389

  

Endothelial cells

 Low   Medium  

Glandular cells

 Medium   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

11.0
overview Male, age 54 Sample 1
TPM: 13.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 9.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 8.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 7.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 10.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 11.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 13.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 15.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 10.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.7
Samples: 149

Max RPKM: 15.2
Min RPKM: 5.4
Std RPKM: 1.3
Median RPKM: 8.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 15.2
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 11.8
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 11.6
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 11.1
GTEX-1122O-1426-SM-5H11R 60-69 years, female 11.0
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 10.9
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 10.9
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 10.9
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 10.8
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 10.7
Show all
Colon - Transverse
RPKM: 8.9
Samples: 196

Max RPKM: 13.6
Min RPKM: 5.2
Std RPKM: 1.3
Median RPKM: 8.8
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 13.6
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 13.5
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 12.8
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 12.5
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 11.9
GTEX-144GM-1226-SM-5LU52 20-29 years, male 11.9
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 11.9
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 11.7
GTEX-1128S-1626-SM-5H12O 60-69 years, female 11.6
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 11.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

28.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 28.0
FF:10014-101C5 62,83,84 years, mixed 28.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.