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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:6.8TPM
GTEx:3.6RPKM
FANTOM5:35.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA013349

  

Antibody CAB025994

  

Endothelial cells

 Medium   Low  

Glandular cells

 High   Low  

Peripheral nerve/ganglion

 Medium   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

6.8
overview Male, age 54 Sample 1
TPM: 7.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 7.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 8.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 5.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 6.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 6.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 5.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 9.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 7.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.8
Samples: 149

Max RPKM: 9.0
Min RPKM: 1.8
Std RPKM: 0.9
Median RPKM: 3.7
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 9.0
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 6.6
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 6.1
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 5.7
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 5.6
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 5.6
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 5.5
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 5.5
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 5.5
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 5.4
Show all
Colon - Transverse
RPKM: 3.5
Samples: 196

Max RPKM: 5.6
Min RPKM: 0.6
Std RPKM: 0.7
Median RPKM: 3.5
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 5.6
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 5.2
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 5.1
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 5.0
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 4.9
GTEX-OIZH-1426-SM-3NB1O 50-59 years, male 4.9
GTEX-ZTSS-1126-SM-5985O 40-49 years, male 4.9
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 4.8
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 4.8
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 4.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

35.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 35.2
FF:10014-101C5 62,83,84 years, mixed 35.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.