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PIGC

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.8TPM
GTEx:4.6RPKM
FANTOM5:18.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA036663

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

17.8
overview Male, age 54 Sample 1
TPM: 17
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 18.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 11.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 18.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 13.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 22.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 21.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 17.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 19.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 18.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 21.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 14.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.8
Samples: 149

Max RPKM: 7.3
Min RPKM: 2.6
Std RPKM: 0.8
Median RPKM: 4.8
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 7.3
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 7.0
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 6.5
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 6.5
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 6.4
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 6.3
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 6.2
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 6.2
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 6.1
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 6.1
Show all
Colon - Transverse
RPKM: 4.4
Samples: 196

Max RPKM: 6.5
Min RPKM: 0.6
Std RPKM: 0.7
Median RPKM: 4.4
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 6.5
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 6.1
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 6.0
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 5.9
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 5.8
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 5.8
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 5.7
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 5.7
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 5.7
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 5.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

18.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 18.6
FF:10014-101C5 62,83,84 years, mixed 18.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.