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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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PATHOLOGY ATLAS MELANOMA

GENE/PROTEIN

Antibody validation

Dictionary

Melanoma

MELANOMA - Survival analysis

Best separation

Median separation

Expression cutoff

111.3 FPKM 108.8 FPKM

3-year survival high

38% 40%

3-year survival low

20% 19%

Log-rank P value

1.59e-1 3.16e-1

Interactive survival scatter plot (individual patient data)




Stage:



TCGA RNA samples

Average FPKM

111.7

Number of samples

102

Samples

Sample

Description

FPKM

TCGA-ER-A42H-01A 77 years, male, white 262.5
TCGA-BF-AAP1-01A 86 years, male, white, stage:iic 193.8
TCGA-BF-A1Q0-01A 80 years, male, white, stage:iic 176.8
TCGA-EB-A3XC-01A 74 years, male, white, stage:iic 174.5
TCGA-EB-A5FP-01A 65 years, female, white, stage:iv 172.6
TCGA-BF-A5ES-01A 76 years, female, white, stage:iic 172.3
TCGA-FW-A5DX-01A 71 years, male, white, stage:iiic 170.6
TCGA-EB-A42Y-01A 73 years, female, asian, stage:iic 170.3
TCGA-EB-A97M-01A 66 years, male, white, stage:iic 159.8
TCGA-GF-A2C7-01A 48 years, male, white, stage:iic 155.1
TCGA-EB-A57M-01A 56 years, male, asian, stage:iiib 153.7
TCGA-GN-A263-01A 24 years, male, white, stage:iv 147.7
TCGA-EB-A82B-01A 58 years, female, asian, stage:iii 146.3
TCGA-FR-A3R1-01A 69 years, male, white, stage:iic 146.0
TCGA-BF-A9VF-01A 77 years, male, white, stage:iic 138.2
TCGA-BF-A3DN-01A 81 years, female, white, stage:iiic 136.6
TCGA-EB-A6QY-01A 71 years, male, white, stage:iic 134.7
TCGA-EB-A4IQ-01A 42 years, female, asian, stage:iiib 131.3
TCGA-ER-A2NB-01A 57 years, male, white, stage:iiib 130.5
TCGA-EB-A24D-01A 72 years, male, white, stage:iiib 129.7
TCGA-EB-A3XD-01A 53 years, female, white, stage:iic 129.5
TCGA-EB-A44O-01A 69 years, male, white, stage:iib 128.1
TCGA-BF-A3DL-01A 84 years, female, white, stage:iiib 126.8
TCGA-EB-A42Z-01A 49 years, male, asian, stage:iiic 125.9
TCGA-XV-AAZW-01A 62 years, female, white, stage:ii 125.0
TCGA-EB-A51B-01A 53 years, male, white, stage:iic 124.8
TCGA-BF-A3DJ-01A 36 years, female, white, stage:iiib 124.8
TCGA-EB-A1NK-01A 48 years, male, white, stage:iic 123.1
TCGA-BF-A1PU-01A 46 years, female, white, stage:iic 123.0
TCGA-FR-A2OS-01A 49 years, female, white, stage:iic 122.4
TCGA-EB-A4P0-01A 82 years, male, white, stage:iic 122.4
TCGA-BF-AAOU-01A 73 years, female, white, stage:iic 122.0
TCGA-EB-A6QZ-01A 76 years, female, white, stage:iia 121.2
TCGA-GN-A26C-01A 77 years, male, white, stage:iiic 121.2
TCGA-EB-A4OZ-01A 42 years, female, white, stage:iiic 120.9
TCGA-ER-A19T-01A 51 years, male, white, stage:iv 120.8
TCGA-BF-AAP6-01A 55 years, male, white, stage:iii 120.7
TCGA-ER-A19K-01A 79 years, female, white, stage:iic 120.6
TCGA-EB-A82C-01A 70 years, female, asian, stage:iic 119.2
TCGA-EB-A299-01A 63 years, male, white, stage:iia 119.2
TCGA-D9-A4Z2-01A 50 years, male, white, stage:iiic 117.5
TCGA-GN-A4U5-01A 61 years, female, white, stage:ib 117.4
TCGA-GN-A8LN-01A 68 years, male, white, stage:iic 115.1
TCGA-EB-A44N-01A 59 years, male, white, stage:iic 114.8
TCGA-EB-A3XB-01A 63 years, male, white, stage:ii 111.4
TCGA-BF-A1PX-01A 56 years, male, white, stage:iiib 111.3
TCGA-XV-A9W5-01A 51 years, male, white, stage:i/ii nos 111.3
TCGA-BF-A5EO-01A 65 years, male, white, stage:iic 111.0
TCGA-EB-A3XF-01A 57 years, male, white, stage:iic 110.6
TCGA-XV-AAZV-01A 56 years, female, white, stage:ii 109.8
TCGA-EB-A24C-01A 56 years, male, white 109.3
TCGA-ER-A196-01A 64 years, female, white, stage:iic 108.3
TCGA-D3-A5GT-01A 43 years, male, white, stage:iiic 106.3
TCGA-BF-AAP4-01A 61 years, male, white, stage:iic 104.0
TCGA-EB-A41B-01A 76 years, female, white, stage:iic 103.6
TCGA-BF-A5EP-01A 75 years, female, white, stage:iiic 102.5
TCGA-EB-A85I-01A 66 years, male, white, stage:iic 100.8
TCGA-BF-A1PZ-01A 71 years, female, white, stage:iib 100.7
TCGA-BF-A5EQ-01A 63 years, male, white, stage:iic 100.4
TCGA-BF-AAP2-01A 62 years, male, white, stage:iib 98.6
TCGA-EB-A6R0-01A 58 years, female, white, stage:iic 97.4
TCGA-XV-A9W2-01A 81 years, male, white, stage:i 97.1
TCGA-BF-A3DM-01A 63 years, male, white, stage:iia 96.9
TCGA-D9-A3Z4-01A 54 years, male, white, stage:iiic 96.1
TCGA-EB-A5VU-01A 56 years, male, asian, stage:iiib 94.9
TCGA-FR-A728-01A 54 years, female, white, stage:iiib 94.3
TCGA-EB-A4XL-01A 56 years, female, white, stage:iic 94.1
TCGA-EB-A5UM-01A 48 years, female, white, stage:iic 94.1
TCGA-BF-A1PV-01A 74 years, female, white, stage:iic 93.7
TCGA-XV-A9VZ-01A 90 years, female, white, stage:ii 93.1
TCGA-EB-A44P-01A 58 years, female, white, stage:iic 92.8
TCGA-D9-A4Z5-01A 68 years, male, white, stage:iib 92.5
TCGA-EB-A85J-01A 66 years, female, white, stage:iib 92.4
TCGA-EB-A41A-01A 90 years, male, white, stage:iic 91.5
TCGA-EB-A551-01A 78 years, female, white, stage:iiic 90.6
TCGA-EB-A3XE-01A 77 years, female, white, stage:iia 90.3
TCGA-FS-A1ZN-01A 43 years, male, white, stage:iiia 90.0
TCGA-EB-A5SE-01A 73 years, male, white, stage:iib 89.9
TCGA-XV-AAZY-01A 76 years, female, white, stage:iiic 89.8
TCGA-EB-A550-01A 75 years, female, white, stage:iic 89.5
TCGA-EB-A431-01A 34 years, male, white, stage:iic 89.3
TCGA-EB-A4IS-01A 77 years, male, white, stage:iib 88.7
TCGA-HR-A5NC-01A 90 years, female 88.4
TCGA-GF-A769-01A 39 years, male, white, stage:iic 88.1
TCGA-EB-A3Y6-01A 56 years, female, white, stage:iic 87.7
TCGA-ER-A2NF-01A 53 years, male, white, stage:iiib 87.5
TCGA-BF-AAP7-01A 76 years, female, white, stage:iic 85.9
TCGA-EB-A3Y7-01A 86 years, female, white, stage:iiib 85.8
TCGA-YG-AA3N-01A 67 years, male, stage:iic 84.4
TCGA-EB-A3HV-01A 37 years, male, white, stage:iic 83.8
TCGA-BF-AAOX-01A 83 years, male, white, stage:iic 82.4
TCGA-BF-A5ER-01A 63 years, male, white, stage:iic 82.4
TCGA-IH-A3EA-01A 61 years, male, white, stage:iic 80.9
TCGA-BF-AAP8-01A 58 years, male, white, stage:iic 79.2
TCGA-FR-A726-01A 90 years, male, white, stage:iic 76.9
TCGA-D9-A4Z3-01A 73 years, female, white, stage:iiic 69.6
TCGA-EB-A4OY-01A 65 years, female, white, stage:iiib 69.1
TCGA-EB-A553-01A 62 years, male, white, stage:iic 67.1
TCGA-WE-A8K4-01A 85 years, male, white, stage:iib 62.4
TCGA-DA-A960-01A 73 years, male, white, stage:iib 61.0
TCGA-ER-A194-01A 77 years, male, white 55.9
TCGA-EB-A5SF-01A 78 years, female, white, stage:iic 50.4
Show all

MELANOMA - Protein expression

 

Antibody HPA047820

Antibody CAB035994

 Antibody staining
  High
  Medium
  Low
  Not detected
   
 Intensity
  Strong
  Moderate
  Weak
  Negative
   
 Quantity
  >75%
  75%-25%
  <25%
  Rare
  Negative
   
 Location
  Cytoplasmic/membranous,nuclear
  Cytoplasmic/membranous
  Nuclear
  None
   

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