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COLON - Expression summary

RNA expression
HPA:0.5TPM
GTEx:0.5RPKM
FANTOM5:2.5Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

0.5
overview Male, age 54 Sample 1
TPM: 0.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 0.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 0.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 0.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 1.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 0.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.7
Samples: 149

Max RPKM: 2.4
Min RPKM: 0.0
Std RPKM: 0.4
Median RPKM: 0.7
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 2.4
GTEX-11GS4-1826-SM-5HL4T 60-69 years, male 2.1
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 2.0
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 2.0
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 1.8
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 1.6
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 1.6
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 1.5
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 1.4
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 1.4
Show all
Colon - Transverse
RPKM: 0.3
Samples: 196

Max RPKM: 1.6
Min RPKM: 0.0
Std RPKM: 0.3
Median RPKM: 0.1
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 1.6
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 1.5
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 1.4
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 1.3
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 1.3
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 1.3
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 1.2
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 1.1
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 1.1
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 1.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

2.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 2.5
FF:10014-101C5 62,83,84 years, mixed 2.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.