Tissue expression of CLEC18B - Summary - The Human Protein Atlas

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.

CLEC18B

TISSUE

CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	CLEC18B
Gene description	C-type lectin domain family 18, member B
Protein class	Predicted secreted proteins
Predicted localization	Secreted
Number of transcripts	4
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Group enriched (kidney, testis)
GTEx:	Tissue enhanced (kidney, testis)

Protein evidence

Evidence at transcript level

Protein expression

Cytoplasmic expression in several different tissue types, including renal tubules.

DATA RELIABILITY
Data reliability description	Pending external verification. Caution, targets protein from more than one gene. Secreted protein, tissue location of RNA and protein might differ and correlation is complex.
Reliability score	Uncertain based on 1 antibody. HPA048976
	SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Group enriched (kidney, testis)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (kidney, testis)

GENE INFORMATION
Gene name	CLEC18B
Synonyms
Description	C-type lectin domain family 18, member B (HGNC Symbol)
Entrez gene summary
Chromosome	16
Cytoband	q23.1
Chromosome location (bp)	74408270 - 74421953
Protein evidence	Evidence at transcript level (all genes)
Ensembl	ENSG00000140839 (version 83.38)
Entrez gene	497190
UniProt	Q6UXF7 (UniProt - Evidence at transcript level)
neXtProt	NX_Q6UXF7
Antibodypedia	CLEC18B antibodies

PROTEIN BROWSER

CLEC18B-001	CLEC18B-201	CLEC18B-202	CLEC18B-203

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CLEC18B-001 ENSP00000341051 ENST00000339953	Q6UXF7 [Direct mapping] C-type lectin domain family 18 member B Show all	MEMSAT3 predicted membrane proteins Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Show all	GO:0005515 [protein binding] GO:0005576 [extracellular region] GO:0005768 [endosome] GO:0005794 [Golgi apparatus] GO:0016529 [sarcoplasmic reticulum] GO:0030246 [carbohydrate binding] Show all	455 aa 50.5 kDa	Yes	0
CLEC18B-201 ENSP00000482974 ENST00000617101	A0A087X0Q5 [Direct mapping] C-type lectin domain family 18 member B Show all	MEMSAT3 predicted membrane proteins Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Show all	GO:0005515 [protein binding] Show all	446 aa 49.7 kDa	Yes	0
CLEC18B-202 ENSP00000483587 ENST00000619275	A0A087X0Q5 [Direct mapping] C-type lectin domain family 18 member B Show all	MEMSAT3 predicted membrane proteins Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Show all	GO:0005515 [protein binding] Show all	446 aa 49.7 kDa	Yes	0
CLEC18B-203 ENSP00000477577 ENST00000620745	A0A087WT46 [Direct mapping] C-type lectin domain family 18 member B Show all	MEMSAT3 predicted membrane proteins Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Show all	GO:0005515 [protein binding] Show all	303 aa 33.2 kDa	Yes	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.