Fields »
ABOUT
HELP
BLOG
PGD

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:59.2TPM
GTEx:21.0RPKM
FANTOM5:64.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA031314

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 

COLON - HPA RNA-seq

Average TPM

59.2
overview Male, age 54 Sample 1
TPM: 70
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 58.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 69.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 38.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 46.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 54.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 85.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 52.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 57.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 74.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 70.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 53
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 38.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.7
Samples: 149

Max RPKM: 59.6
Min RPKM: 5.4
Std RPKM: 5.3
Median RPKM: 10.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 59.6
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 25.2
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 20.8
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 20.5
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 18.8
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 18.5
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 18.3
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 18.2
GTEX-XBED-1726-SM-47JYO 60-69 years, male 18.2
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 18.0
Show all
Colon - Transverse
RPKM: 28.0
Samples: 196

Max RPKM: 158.1
Min RPKM: 7.2
Std RPKM: 18.7
Median RPKM: 25.2
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 158.1
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 135.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 104.4
GTEX-144GN-1126-SM-5LU33 50-59 years, male 90.6
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 83.1
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 62.7
GTEX-QV31-0826-SM-4R1KR 30-39 years, male 52.6
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 52.5
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 51.1
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 50.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

64.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 64.8
FF:10014-101C5 62,83,84 years, mixed 64.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.