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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:56.7TPM
GTEx:10.4RPKM
FANTOM5:53.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA029754

  

Antibody CAB010363

  

Endothelial cells

 Medium   Low  

Glandular cells

 High   Medium  

Peripheral nerve/ganglion

 High   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

56.7
overview Male, age 54 Sample 1
TPM: 70.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 76.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 56.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 59.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 40.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 40.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 58.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 48.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 40.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 60.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 82.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 63.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 39
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.7
Samples: 149

Max RPKM: 13.7
Min RPKM: 4.8
Std RPKM: 1.8
Median RPKM: 8.6
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 13.7
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 12.9
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 12.7
GTEX-13111-1926-SM-5GCOL 50-59 years, male 12.5
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 12.5
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 12.4
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 12.3
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 11.9
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 11.6
GTEX-11GS4-1826-SM-5HL4T 60-69 years, male 11.5
Show all
Colon - Transverse
RPKM: 11.6
Samples: 196

Max RPKM: 26.8
Min RPKM: 1.2
Std RPKM: 3.5
Median RPKM: 11.2
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 26.8
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 21.3
GTEX-11DXZ-1726-SM-5H12M 50-59 years, male 19.8
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 19.6
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 19.0
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 18.4
GTEX-139YR-2126-SM-5KM11 50-59 years, male 18.1
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 18.0
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 17.9
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 17.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

53.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 53.4
FF:10014-101C5 62,83,84 years, mixed 53.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.