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Gene name

Class

Subclass

Chromosome

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In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

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Searches

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Cell type

Expression

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Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

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Antibodies

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CALM2
  • TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

CALM2

Gene description

Calmodulin 2 (phosphorylase kinase, delta)

Protein class

Cancer-related genes
Disease related genes
Plasma proteins
Potential drug targets
Predicted intracellular proteins
RAS pathway related proteins
Transporters

Predicted localization

Intracellular

Number of transcripts

4
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Ubiquitous cytoplasmic expression.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data. Caution, targets protein from more than one gene.

Reliability score

Approved based on 2 antibodies.
HPA044999 , CAB007790
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

CALM2 (HGNC Symbol)

Synonyms

CAMII, PHKD

Description

Calmodulin 2 (phosphorylase kinase, delta) (HGNC Symbol)

Entrez gene summary

This gene is a member of the calmodulin gene family. There are three distinct calmodulin genes dispersed throughout the genome that encode the identical protein, but differ at the nucleotide level. Calmodulin is a calcium binding protein that plays a role in signaling pathways, cell cycle progression and proliferation. Several infants with severe forms of long-QT syndrome (LQTS) who displayed life-threatening ventricular arrhythmias together with delayed neurodevelopment and epilepsy were found to have mutations in either this gene or another member of the calmodulin gene family (PMID:23388215). Mutations in this gene have also been identified in patients with less severe forms of LQTS (PMID:24917665), while mutations in another calmodulin gene family member have been associated with catecholaminergic polymorphic ventricular tachycardia (CPVT)(PMID:23040497), a rare disorder thought to be the cause of a significant fraction of sudden cardiac deaths in young individuals. Pseudogenes of this gene are found on chromosomes 10, 13, and 17. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Mar 2015]

Chromosome

2

Cytoband

p21

Chromosome location (bp)

47160082 - 47176601

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000143933 (version 83.38)

Entrez gene

805

UniProt

P62158 (UniProt - Evidence at protein level)

neXtProt

NX_P62158

Antibodypedia

CALM2 antibodies

PROTEIN BROWSER

CALM2-001
CALM2-006
CALM2-007
CALM2-201

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

CALM2-001
ENSP00000272298
ENST00000272298
P62158 [Direct mapping]
Calmodulin
B4DJ51 [Target identity:100%; Query identity:100%]
Calmodulin 1 (Phosphorylase kinase, delta), isoform CRA_a; Calmodulin 3 (Phosphorylase kinase, delta), isoform CRA_b; Epididymis secretory protein Li 72; cDNA FLJ61744, highly similar to Calmodulin
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Transporters
Predicted intracellular proteins
Plasma proteins
RAS pathway related proteins
Cancer-related genes
   Candidate cancer biomarkers
Disease related genes
Potential drug targets
Show all
GO:0000165 [MAPK cascade]
GO:0000186 [activation of MAPKK activity]
GO:0000922 [spindle pole]
GO:0002027 [regulation of heart rate]
GO:0002223 [stimulatory C-type lectin receptor signaling pathway]
GO:0002576 [platelet degranulation]
GO:0005509 [calcium ion binding]
GO:0005513 [detection of calcium ion]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005813 [centrosome]
GO:0005829 [cytosol]
GO:0005876 [spindle microtubule]
GO:0005886 [plasma membrane]
GO:0005975 [carbohydrate metabolic process]
GO:0005980 [glycogen catabolic process]
GO:0006006 [glucose metabolic process]
GO:0006936 [muscle contraction]
GO:0007165 [signal transduction]
GO:0007173 [epidermal growth factor receptor signaling pathway]
GO:0007186 [G-protein coupled receptor signaling pathway]
GO:0007202 [activation of phospholipase C activity]
GO:0007264 [small GTPase mediated signal transduction]
GO:0007265 [Ras protein signal transduction]
GO:0007268 [synaptic transmission]
GO:0007411 [axon guidance]
GO:0007596 [blood coagulation]
GO:0007603 [phototransduction, visible light]
GO:0008286 [insulin receptor signaling pathway]
GO:0008543 [fibroblast growth factor receptor signaling pathway]
GO:0010800 [positive regulation of peptidyl-threonine phosphorylation]
GO:0010801 [negative regulation of peptidyl-threonine phosphorylation]
GO:0010880 [regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum]
GO:0010881 [regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion]
GO:0016056 [rhodopsin mediated signaling pathway]
GO:0019901 [protein kinase binding]
GO:0019904 [protein domain specific binding]
GO:0021762 [substantia nigra development]
GO:0022400 [regulation of rhodopsin mediated signaling pathway]
GO:0030017 [sarcomere]
GO:0030168 [platelet activation]
GO:0030801 [positive regulation of cyclic nucleotide metabolic process]
GO:0031432 [titin binding]
GO:0031954 [positive regulation of protein autophosphorylation]
GO:0031982 [vesicle]
GO:0031996 [thioesterase binding]
GO:0031997 [N-terminal myristoylation domain binding]
GO:0032465 [regulation of cytokinesis]
GO:0032516 [positive regulation of phosphoprotein phosphatase activity]
GO:0034704 [calcium channel complex]
GO:0035307 [positive regulation of protein dephosphorylation]
GO:0038095 [Fc-epsilon receptor signaling pathway]
GO:0043274 [phospholipase binding]
GO:0043539 [protein serine/threonine kinase activator activity]
GO:0043647 [inositol phosphate metabolic process]
GO:0044281 [small molecule metabolic process]
GO:0044325 [ion channel binding]
GO:0045087 [innate immune response]
GO:0046209 [nitric oxide metabolic process]
GO:0048010 [vascular endothelial growth factor receptor signaling pathway]
GO:0048011 [neurotrophin TRK receptor signaling pathway]
GO:0050999 [regulation of nitric-oxide synthase activity]
GO:0051343 [positive regulation of cyclic-nucleotide phosphodiesterase activity]
GO:0051592 [response to calcium ion]
GO:0055117 [regulation of cardiac muscle contraction]
GO:0060315 [negative regulation of ryanodine-sensitive calcium-release channel activity]
GO:0060316 [positive regulation of ryanodine-sensitive calcium-release channel activity]
GO:0061024 [membrane organization]
GO:0070062 [extracellular exosome]
GO:0071902 [positive regulation of protein serine/threonine kinase activity]
GO:0072542 [protein phosphatase activator activity]
GO:1901844 [regulation of cell communication by electrical coupling involved in cardiac conduction]
Show all
149 aa
16.8 kDa
No 0
CALM2-006
ENSP00000411440
ENST00000456319
H0Y7A7 [Direct mapping]
Calmodulin
Show all
   THUMBUP predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
RAS pathway related proteins
Show all
GO:0005509 [calcium ion binding]
Show all
187 aa
20.8 kDa
No 0
CALM2-007
ENSP00000387065
ENST00000409563
E7EMB3 [Direct mapping]
Calmodulin
Show all
Predicted intracellular proteins
RAS pathway related proteins
Show all
GO:0005509 [calcium ion binding]
Show all
196 aa
21.7 kDa
No 0
CALM2-201
ENSP00000486952
ENST00000628793
M0QZ52 [Direct mapping]
Calmodulin; Calmodulin 3 (Phosphorylase kinase, delta), isoform CRA_d
Show all
Predicted intracellular proteins
RAS pathway related proteins
Show all
GO:0005509 [calcium ion binding]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
Show all
83 aa
9.4 kDa
No 0

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