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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:673.3TPM
GTEx:374.1RPKM
FANTOM5:453.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA044999

  

Antibody CAB007790

  

Endothelial cells

 Medium   Medium  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Not detected   Medium  
   
   

COLON - HPA RNA-seq

Average TPM

673.3
overview Male, age 54 Sample 1
TPM: 596.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 634.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 611.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 681.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 482.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 969.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 720.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 699.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 732.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 678.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 720.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 741.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 485.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

374.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 396.9
Samples: 149

Max RPKM: 710.1
Min RPKM: 157.4
Std RPKM: 100.8
Median RPKM: 387.6
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 710.1
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 683.9
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 628.6
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 592.0
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 586.1
GTEX-12WSD-2626-SM-5EGJE 60-69 years, female 572.7
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 571.7
GTEX-117XS-2226-SM-5GIE1 60-69 years, male 571.6
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 556.5
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 553.2
Show all
Colon - Transverse
RPKM: 356.8
Samples: 196

Max RPKM: 721.4
Min RPKM: 233.9
Std RPKM: 73.6
Median RPKM: 346.4
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 721.4
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 647.2
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 595.3
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 559.9
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 541.6
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 530.3
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 510.7
GTEX-SNMC-1126-SM-4DM5M 20-29 years, male 510.1
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 509.8
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 508.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

453.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 453.9
FF:10014-101C5 62,83,84 years, mixed 453.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.