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ROM1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.9TPM
GTEx:6.2RPKM
FANTOM5:4.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not available
Glandular cells:Not detected
Peripheral nerve/ganglion:Not available
 

Antibody staining

Antibody HPA028910

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

2.9
overview Male, age 54 Sample 1
TPM: 3.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 4.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 4.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

6.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 8.1
Samples: 149

Max RPKM: 20.6
Min RPKM: 2.0
Std RPKM: 3.4
Median RPKM: 7.3
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 20.6
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 18.6
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 17.8
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 16.5
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 16.4
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 16.0
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 15.9
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 15.0
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 15.0
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 14.8
Show all
Colon - Transverse
RPKM: 4.8
Samples: 196

Max RPKM: 15.7
Min RPKM: 1.4
Std RPKM: 2.6
Median RPKM: 3.9
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 15.7
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 15.7
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 14.1
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 12.5
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 11.7
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 11.4
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 11.2
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 10.0
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 9.9
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 9.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

4.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 4.2
FF:10014-101C5 62,83,84 years, mixed 4.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.