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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:176.8TPM
GTEx:23.0RPKM
FANTOM5:325.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA036881

  

Antibody HPA036882

  

Antibody CAB009491

  

Endothelial cells

 Low   Not detected   Medium  

Glandular cells

 Medium   High   Medium  

Peripheral nerve/ganglion

 Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

176.8
overview Male, age 54 Sample 1
TPM: 154.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 190.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 251.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 223.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 120.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 134.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 179.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 176
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 143.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 204
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 200.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 187.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 131.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

23.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 20.6
Samples: 149

Max RPKM: 37.6
Min RPKM: 6.7
Std RPKM: 6.1
Median RPKM: 20.4
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 37.6
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 37.2
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 35.9
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 34.4
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 34.2
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 34.2
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 33.7
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 32.2
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 31.5
GTEX-13PVR-1726-SM-5Q5EC 60-69 years, female 30.7
Show all
Colon - Transverse
RPKM: 24.8
Samples: 196

Max RPKM: 52.6
Min RPKM: 11.3
Std RPKM: 6.3
Median RPKM: 24.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 52.6
GTEX-144GM-1226-SM-5LU52 20-29 years, male 46.8
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 42.9
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 39.5
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 39.0
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 38.9
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 38.8
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 38.1
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 37.7
GTEX-11P7K-1526-SM-5EGI7 30-39 years, male 37.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

325.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 325.2
FF:10014-101C5 62,83,84 years, mixed 325.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.