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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:6.7TPM
GTEx:5.5RPKM
FANTOM5:25.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody CAB016136

  

Antibody CAB017773

  

Endothelial cells

 Not detected   Medium  

Glandular cells

 Medium   High  

Peripheral nerve/ganglion

 Medium   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

6.7
overview Male, age 54 Sample 1
TPM: 12
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 9.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 10.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 7.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 4.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 4.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 4.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 5.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 7.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 6.0
Samples: 149

Max RPKM: 24.0
Min RPKM: 2.5
Std RPKM: 2.3
Median RPKM: 5.6
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 24.0
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 14.5
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 12.4
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 12.2
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 11.7
GTEX-ZZ64-0826-SM-5E449 20-29 years, male 9.8
GTEX-11ZTT-1626-SM-5EQKR 60-69 years, female 9.7
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 9.3
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 9.1
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 9.0
Show all
Colon - Transverse
RPKM: 5.2
Samples: 196

Max RPKM: 12.9
Min RPKM: 3.0
Std RPKM: 1.3
Median RPKM: 4.9
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 12.9
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 12.1
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 8.7
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 8.6
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 8.6
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 8.6
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 8.3
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 8.2
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 8.0
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 7.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

25.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 25.1
FF:10014-101C5 62,83,84 years, mixed 25.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.